PAGER3: A Pathways, Annotated-lists and Gene signatures Electronic Repository Version 3

Input by

Identify which pathways, annotated-lists, and gene signatures (PAG) in the database are sigificantly related to the following input gene list ("query genes")

Basic Parameters

Gene List

Example DEG: Explicit marker for resistant-sensitive leukemia single-cell

Type of PAGs are

Organism

Advance Parameters Click to show

Size of genes in PAGs

Similarity scores (0,1)

Number of overlapping genes

Cohesion

p-value

FDR

Data Source

Identify which pathways, annotated-lists, and gene signatures (PAG) in the database are sigificantly related to the following input gene list ("query genes")

Basic Parameters

Gene List

Example DEG: differentially expressed gene and expression primary human lung epithelium (NHBE) vs. mock treated.

Select a column to be used in gene ranking

Type of PAGs are

Organism

Advance Parameters Click to show

Size of genes in PAGs

Similarity scores (0,1)

Number of overlapping genes

Cohesion

p-value

FDR

Data Source

Identify which pathways, annotated-lists, and gene signatures (PAG) in the database are sigificantly related to the following input gene list ("query genes") in your uploaded DEG file.

File Upload Parameters

Please upload a tab seperated file

The "gene symbol" column

The "fold change" column

The "p-value" column

The "adjusted p-value" column

Basic Parameters Click to show

Gene p-value cutoff

Gene adjusted value cutoff

Type of PAGs are

Organism

Advance Parameters Click to show

Size of genes in PAGs

Similarity scores (0,1)

Number of overlapping genes

Cohesion

p-value

FDR

Data Source