About Us
- Jake Y. Chen, Ph.D.
- Clark Xu (Data Collection and User Interface)
- Eric Zhang (Database Curation and User Interface)
- Nishant Batra (Database Curation and User Interface)
- Samuel Bharti (User Interface)
- Thanh Nguyen (Data Collection and Case Study)
- Zhandos Sembay (Database Curation and User Interface)
- Zongliang Yue (Database Construction, Data Integration and User Interface)
- Radomir Slominski (Database Curation)
- Melissa Hall (Database Curation and User Interface)
- 02/12/24 PAGER 3.2 introduces a new section titled Other IDs to PAG Summary. Other IDs lists all the identification codes for additional databases where the PAG can be found.
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12/14/23 PAGER 3.1 releases.
- PAGER 3.1 introduces two new sections, Information Content and Quality Metric Scores, to PAG Summary. Information Content denotes if the gene is rich, neutral, or poor in content based on the normalized cohesion coefficient, nCoCo, score. The Quality Metric Scores show the nCoCo score but will have additional information added in future updates. There was also a reorganization of the order of the PAG Summary and Page. Curator and Curator Contact have been moved to the bottom of the PAG Summary section. The PAG ID has been removed from the title bar.
- 07/31/21 example updates and cellmarker source added.
- 07/27/21 PAG api updates.
- 07/23/21 Gene info backend data feed and gene network update.
- 07/17/21 Gene network backend data feed.
- 07/14/21 The r-type pags search function created.
- 06/13/21 Mail system submission receipt created.
- 05/14/21 Contribution page uploaded file save updates
- 05/07/21 PAG network update.
- 09/15/20 The PAGER-3 version 1.1 releases.
- This project is in part supported by NIH grant awards 3UL1TR003096-02, U01CA223976, and startup grant funding to Dr. Jake Y. Chen. We thank Mr. Jelai Wang from UAB Informatics Institute for supporting the web and overall computing architecture for this work, Mr. Hiren Desai from UAB Information Technology groups for supporting the backend Oracle database 19c management.
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Zongliang Yue, Madhura M. Kshirsagar, Thanh Nguyen, Chayaporn Suphavilai, Michael T. Neylon, Liugen Zhu, Timothy Ratliff, Jake Y. Chen, PAGER: constructing PAGs and new PAG–PAG relationships for network biology, Bioinformatics, Volume 31, Issue 12, 15 June 2015, Pages i250–i257, https://doi.org/10.1093/bioinformatics/btv265
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Zongliang Yue, Qi Zheng, Michael T Neylon, Minjae Yoo, Jimin Shin, Zhiying Zhao, Aik Choon Tan, Jake Y Chen, PAGER 2.0: an update to the pathway, annotated-list and gene-signature electronic repository for Human Network Biology, Nucleic Acids Research, Volume 46, Issue D1, 4 January 2018, Pages D668–D676, https://doi.org/10.1093/nar/gkx1040
- # indicates the authors have equal contributions
- If you have questions or comments about the database contents, please email Dr. Jake Chen, jakechen@uab.edu.
- If you need any technical support, please email Zongliang Yue, zongyue@uab.edu.
- Our lab: AI.MED Laboratory, University of Alabama at Birmingham, Alabama, USA. Link: http://bio.informatics.uab.edu/