PAGER-CoV User Upload Instructions:

We recommend users to upload geneset data using one of the two forms we provide below. For differentially expressed genesets, use the DEG format. For genesets curated from literature, use the LIT format.

1. Submission Formats

   1. Differential gene expression format (DEG)

      Use this form for submitting differentially expressed genes from your bulk RNA-sequencing or single-cell sequencing experiments.

   
   
   2. Literature-curation format (LIT)

      Use this form to submit gene sets curated from related literature/reviews in your research field.




2. Submit Data

   Enter your email
   
   Select Type of Data(OR Data Source)
   --Type of Data-- From Ontology Data(T..) From pathway data(W..) From Genomics/Epigenomics data(G..) From functional genomics data(F..) From proteomics data(P..) From chemical perturbations data(M..) From metabolomics data(B..) From PAGER data(R..) From genomics single gene(N..)
   
   Select Format
   --File format-- DEG format Literature-curation format
   
   Select Relationship details
   --Relationship details-- No relationship mapped(..X) Contains Some interactions(..I) Contains interactions + parameters of interactions(..J) Contains some regulatory data (may also include interactions)(..G) Contains some regulatory data + parameter of regulations(..H) Contains some chemical reaction data(..R) Contains some chemical reaction data + parameters of reactions(..S) Contains model data (mixture regulatory and reaction data)(..M) Contains parameterized model data (mixture regulatory and reaction data + parameters)(..P)
   
   
   
   
   
   We try to make the content submission procedures easy for the user, please email us if you have any questions with a brief description of the data you are trying to submit.